NBIAP NEWS REPORT June 1, 1993 (NOTE: If you wish to skip the News Report and go directly to the Main Menu, type N and press ENTER) (NOTE: To download the News Report, type N and press ENTER to go to the Main Menu. Then type D and choose NEWS.RPT as the file name. Choose a transfer protocol, set up your computer to receive the file, and follow the subsequent prompts.) REGULATORY UPDATE NOTIFICATION PROCEDURE FOR SIX TRANSGENIC CROPS IN EFFECT The USDA's Animal and Plant Health Inspection Service (APHIS) is issuing a "User's Guide for Submitting Notifications" under the new rule that went into effect on April 30, 1993. The six eligible crops are transgenic corn, cotton, potato, tobacco, tomato and soybeans. Some 52 field test permit applications which were pending with APHIS on 30 April have been approved for notification by APHIS These field tests can now go forward under the Notification rule without a permit. Henceforth, notification letters must be submitted 30 days before a planned introduction. APHIS must approve or disapprove within that period. The User's Guide contains sample Interstate Movement and Release Notification, Release Notification, Interstate Movement Notification and Importation Notification Letters. It also contains instructions for submitting Confidential Business Information, Procedures for CBI Authorization by States, and comments on meeting the performance standards in 7 CFR 340. (c). In addition to calling for the standard information about the applicant, the duration of the introduction must be stated in the Notification letter. For release, the duration may be multi-year and should be from the time of planting through the time of destruction of the final crop. Each notification should refer to only one recipient plant species such as corn or potatoes. Different cultivars may be submitted under the same notification. With respect to the Regulated Article (genetically modified plant), information requested includes designation of the transformed line, the category of modification, the phenotype and genotype of each tranformant line, and a brief summary of the elements in the constructs and the organisms from which they were derived. In general, a separate notification should be submitted for each category/phenotype combination. The method of transformation for each transformed line should also be specified. The notification must also contain a signed and dated certification that the regulated article will be introduced in accordance with the eligibility criteria and the performance standards set forth in the rule. The Notification Guidelines provide examples of protocols to be followed to meet performance standards for shipping and planting transgenic corn, cotton, potato, tobacco, tomato and soybean plants. The Guidelines point out that performance standards may be met by many protocols that are designed to meet the needs of the individual circumstances. It is suggested that researchers seek additional guidance for individual circumstances by consulting APHIS reports of workshops on safeguards for transgenic corn and potatoes; and consulting appropriate breeder's literature and breeder's practice on ensuring genetic isolation. For copies of the "User's Guide" contact: Arnold Foudin, PhD., Deputy Director Biotechnology Permits, Biotechnology, Biologics and Environmental Protection (BBEP), Room 850, Federal Bldg. 6505 Belcrest Road, Hyattsville, Md 20782. Telephone: 301-436-7612. AGRICULTURAL BIOTECHNOLOGY RESEARCH ADVISORY COMMITTEE (ABRAC) MEETING On June 29-30, 1993, the ABRAC will meet in the Board of Directors Room, Conference and Education Facility, North Carolina Biotechnology Center, 15 T.W. Alexander Drive, Research Triangle Park, North Carolina 27709-3547. The purpose of ABRAC is to review matters pertaining to agricultural biotechnology research and to develop advice for the Secretary of Agriculture through the Assistant Secretary for Science and Education with respect to policies, programs, operations and activities associated with the conduct of agricultural biotechnology. Items to be considered at this meeting include activities of subcommittees working on transgenic animals, aquatic biotechnology and environmental safety, and societal impacts of food and agricultural biotechnology. For more information, contact Drs. Alvin Young or Daniel Jones, Office of Agricultural Biotechnology, Cooperative State Research Service (CSRS), USDA, Room 1001, Rosslyn Plaza E, 14th Street and Independence Ave., SW, Washington, DC 20520-2200. Telephone 703-235-4419. ARE COLLEGES OF AGRICULTURE IRRELEVANT? "For more than a century, the land-grant colleges of agriculture helped ensure a bountiful food supply for the United States. Now the colleges' well-being and even survival are threatened." So began an article by James H. Meyer, Chancellor Emeritus of the University of California at Davis in the Policy Forum section of Science, 14 May 1993, pp. 881 and 1007. Entitled "The Stalemate in Food and Agricultural Research, Teaching and Extension," Chancellor Meyer continued by pointing out that, in general, colleges of agriculture have stuck with their agrarian tradition and have had difficulty adjusting to changing social conditions, to modern urban and consumer interests, and to the increasing interdependence of rural, urban, and global communities. Because of this, the American public has come to classify colleges of agriculture as irrelevant. The author notes that as early as 1966 a need to broaden the missions of colleges of agriculture was recognized by leaders from land grant universities. Some progress was made in the intervening years in broadening the missions of teaching and extension. However, in research, the traditional farm oriented view prevailed. The major challenge was the "development of an agriculture that is economically viable, internationally competitive, and environmentally sensitive. The relevance of agricultural research to social and environmental issues pertinent to human health and welfare was deemed less significant than direct agricultural concerns." While some institutions have succeeded in adapting, many colleges of agriculture are baffled by efforts to identify and address the challenges they confront. Faculty may have developed an insular mentality, being apart rather than blending with the mainstream of intellectual life of their institutions. The need for interdisciplinary, interdepartmental, and multidisciplinary research has increased to such an extent that a new type of organization may be required. Chancellor Meyer poses the question, "if change is essential in order for land-grant colleges to remain relevant, from what institutions should leadership emanate?" Leaders of land-grant universities surveyed in 1992 downplayed the importance of federal government leadership and felt that leadership should come from within their own colleges. Their viewpoint suggests that the time has come for colleges of agriculture to reduce their dependence on the U.S. Department of Agriculture and other national organizations and to seize the opportunity to develop pertinent and rational missions that reflect their own teaching, research, and extension programs. "To achieve the desired results, ongoing consultation with urban, environmental and consumer groups, in addition to the agricultural community, must be utilized. Attention should focus on the general topic of the human food and fiber system from production through consumption. Environmental quality ought to be an integrating theme throughout, but each college should find its own way to contribute, in keeping with its own regional circumstances." In sum, according to Chancellor Meyer, colleges of agriculture will need help in escaping from old ideas, which means escaping from old organizations built on the past. A new sponsoring organization is needed to aid in this effort. With a new intellectual foundation, and the future firmly in mind, then and only then should a new national organization be instituted. The following article is excerpted from an article of the same title which appeared in "Nature" for 6 May 1993, written by John Maddox. THE DARK SIDE OF MOLECULAR BIOLOGY The season of celebration of the fortieth anniversary of Watson and Crick's account of the structure of DNA, now past its peak, has been conducted with great restraint. Indeed, the research community's self-restraint may have been carried too far. It has mostly been left to outsiders to remark that knowledge of the structure of DNA has made possible and has enforced a change of thinking about the nature of living things. Perhaps the most telling lesson of the past forty years has been the recognition that very different forms of life are built around essentially similar molecular mechanisms. All species are discovered to have more in common with each other than their differences would suggest. The potential benefits are also huge. A proper understanding of the history of the surface of the earth is not the least of them. But it is also probably the case that, in molecular biology, the gap between basic research and its application is smaller than in any other field of technology. That is why the imaginative imitation of life processes will bring great benefits to our successor generations. Two other features of this anniversary have not been sufficiently remarked upon. One is the speed with which the revolution in biology has been effected. It has also been remarkable that people who had not been born in 1953 have been conspicuous at the anniversary celebration. That is not so much a sign that molecular biology is a young person's game, but rather proof of how great a magnet for young people's enthusiasm the structure of DNA has proved to be. So what can be amiss with a torrent of intellectual change as imaginative and potentially as beneficent as that represented by the present condition of molecular biology? First, there is a somewhat technical point. For all its success, molecular biology is still preoccupied with enumeration - the enumeration of the molecular components of cells and of the distinctive organisms to which they belong. This is the spirit in which people are now collecting the details of new genes, and of new nucleotide sequences to go with them; new proteins and their amino-acid sequences; and novel membrane protein molecules, channels or receptors as they may be. That given that only forty years have passed, may be forgivable. It is less easily defendable that the practitioners appear to think less deeply about the meaning of the present abundance of data than is the case in many other fields of science. The explanation of the unreflective state of molecular biology is easily accounted for by its third contemporary characteristic: competitiveness. There can never have been a field of research in which the likelihood that people would make similar discoveries almost simultaneously has been as great. The anxiety to publish quickly, if unreflectively, is reinforced by the reward system in research, which links the award of research grants and promotion to people's publication records. This is an old diagnosis of other ills, of course, but it adds both tension and anxiety to a field of science that would be different and perhaps even more fun, otherwise. ISSUES OF SAFETY IMPEDE DEVELOPMENT OF BIOPESTICIDES AND BIOREMEDIATION Concerns over the release into the environment of genetically modified microorganisms remain a major obstacle to the use of bioremediation and biopesticides. The Environmental Protection Agency (EPA) assesses safety risk in terms of hazard-times-exposure and will only approve a release if it can be shown that the risk is acceptable. To do this, a great deal of data is required to demonstrate that the risk is acceptable. To date, EPA hasn't been able to define what those data should be. This lack of standards has hampered research in bioremediation and biopesticide development. Current research emphasis is on the use of natural organisms and bioreactors in which the microorganisms are contained. One company, GX BioSystems Inc. is working on programmed killing systems that eliminate microorganisms once they have done their job. The modified microorganisms are killed using lethal genes that are controlled by specific factors either present or absent in the environment. The company, for example, has developed an organism that degrades toluene and dies after the toluene concentration falls below a certain level. Survival rates of only one organisms out of 100 million have been documented, significantly reducing the risk of persistence in the environment of the engineered microbe. In the meantime, DuPont Corporation has used natural soil bacteria to destroy chlorinated hydrocarbons in contaminated groundwater. TCE (trichloroethylene), a widely used degreaser and a highly toxic carcinogen, is the most commonly encountered pollutant at EPA Superfund sites across the country. Unfortunately, there are no known bacteria that will use TCE as their food source. Bacteria to be deployed for bioremediation of TCE must be fed on something else - toluene, phenol, methane or ammonia. One approach currently explored by Environgen Inc. takes a structural gene from, for example, Pseudomonas mendicina, removes the regulatory control and puts it into a host vector system, allowing it to turn the gene on or off. The genetically engineered bacteria then produce a TCE-degrading enzyme while being fed on glucose. The EPA views bioremediation as a technology with tremendous potential for environmental improvement. However, before this potential can be realized, gaps in scientific knowledge must be closed and more field experience and data acquired. (From The Bioremediation Report, April, 1993) CHEMICAL RESISTANCE GENES IN INSECTS IDENTIFIED Dr. Michael Rose, Associate Professor of Entomology at North Carolina State University, has identified the genes in cockroaches, tobacco aphids, tobacco budworms and Colorado potato beetles which enable the insects to develop resistance to insecticides. The resistance genes allow insects to alter the chemical makeup of an insecticide. In addition to helping researchers develop products to circumvent insects' resistance ability, the resistance genes may have a future in bioremediation. Professor Rose has inserted the resistance genes into bacteria where they continued to function normally. The next step could be to tailor bacteria specifically to degrade a particular pesticide in soil or toxic byproducts from manufacturing processes. There are limits to the number of chemicals that specific insect genes can degrade, but it appears that a range of chemicals could be controlled. Work is continuing to identify more resistance genes in other insects. (From Biotech Daily, May 10, 1993) (The foregoing was compiled by Jay H. Blowers) RESEARCH UPDATE - ANIMALS AND ANIMAL HEALTH J. Glenn Songer, PhD, University of Arizona BIOTECHNOLOGY IN PREVENTION AND CONTROL OF TROPICAL DISEASES The application of biotechnology to problems relating to production of food animals in developing nations, particularly in the tropics, has many potential benefits. Among these are the worldwide protection of livestock by combatting exotic diseases in their countries of origin and the enhancement of food production to lessen hunger and malnutrition. Increased productivity will come through improvements in basic nutrition, breeding and efficiency of reproduction, and in methods for diagnosis and prevention of disease. For example, a recombinant, vaccinia-virus based vaccine has been developed for prevention of rinderpest, a fatal disease of cattle that occurs widely in Asia and Africa (Yilma T. 1992. The role of biotechnology in tropical diseases. In Williams JC, KM Kocan, and EPJ Gibbs, eds. Tropical Veterinary Medicine: Current Issues and Perspectives. Ann NY Acad Sci 653: 1-5). Rinderpest is an acute viral disease, in which affected animals develop hemorrhagic inflammation and necrosis of the intestinal tract, with bloody diarrhea, rapid weight loss, and death. Although there is an effective, tissue-culture prepared vaccine for rinderpest, there are many problems with its production and use in the field, including transport, lack of refrigeration, and lack of a simple system for administration. The recombinant product, on the other hand, can be freeze-dried, abating problems with transportation and handling, and can be administered effectively to scarified skin. The vaccinia virus strain used to prepare the vaccine is attenuated, in part by natural means and also by inactivation of the viral thymidine kinase gene by genetic engineering methods. Vaccination of cattle with this recombinant vaccine results in a high level of immunity, affording protection against test inoculations of 1000 times the lethal dose of rinderpest virus. The methods for field production and administration of the vaccine are similar to those developed and refined during the worldwide campaign to eradicate smallpox. The results of this work are encouraging, both in the promise for control of rinderpest and in the suggestion that other diseases can be attacked by similar methods. APPLICATION OF BIOTECHNOLOGY TO CONTROL OF TICKBORNE DISEASES New molecular diagnostic methods are having an impact on the study of tickborne hemoparasitic diseases, including anaplasmosis, bovine babesiosis, cowdriosis, and theileriosis (Stiller D. 1992. Biotechnology: A new approach to the diagnosis and control of tick-borne hemoparasitic diseases. In Williams JC, KM Kocan, and EPJ Gibbs, eds. Tropical Veterinary Medicine: Current Issues and Perspectives. Ann NY Acad Sci 653: 19-25). In many cases, these parasites can now be identified in either the animal host or the arthropod vector, by use of DNA probes. To be truly effective, these probes must be sensitive (detecting the parasite even when present in small numbers) and specific (distinguishing between the parasite of interest and other, perhaps closely-related, organisms). Use of the polymerase chain reaction can yield added sensitivity, in that target DNA sequences can be amplified many thousands of times. The potential importance of such tools should not be underestimated, in that they may allow the determination of numbers of parasites present in infected ticks and animal hosts. In fact, it may even be possible, through use of DNA probes and examination of restriction fragment length polymorphisms, to readily identify ticks to the species level. This, and perhaps other information derived through use of these tools, will allow redefinition of the epidemiology of at least some tickborne diseases and, as a consequence, the formulation of more effective means for their control. In related work, scientists at Washington State University and the Kimron Veterinary Institute in Bet Dagan, Israel, are applying molecular methods to prevention of hemoparasitic diseases. Drs. Guy Palmer and T.F. McElwain at WSU and E. Pipano and V. Shkap in Israel (along with other collaborators at both institutions) are involved in projects on babesiosis and anaplasmosis, both of which are aimed at development of a subunit vaccine based on recombinant DNA methodology. INCREASED USE OF NUCLEIC ACID PROBES IN AQUATIC BACTERIOLOGY A recent report details the application of nucleic acid probes to detection of pathogens in aquatic systems, particularly as this pertains to diagnosis of disease in aquatic animals and to recognition of points where human pathogens are concentrated in these animals or in their environments (Vivar‚s CP and J-L Guesdon. 1992. Nucleic acid probes in aquatic bacteriology. Aquaculture 107: 147-154). These methods have been used for comparison of different strains of pathogenic bacteria from fish (Cytophaga psychrophila from rainbow trout) and to identify serovars of Yersinia ruckeri. Classification of vibrios from the marine environment as Vibrio vulnificus, and detection of Edwardsiella ictaluri in channel catfish, have also been accomplished by hybridization-based methods. Use of unique sequences in the 16S ribosomal RNAs of fish pathogens to detect these organisms has also been successful, specifically in the case of Vibrio anguillarum. Application of this technology to protection of human health from pathogens that may accumulate in the aquatic environment are highlighted by the use of specific probes to detect the gene for cholera toxin in isolates of Vibrio cholerae. Similar applications have been made in studies of Salmonella sp., and detection of the development of mercury tolerance in aquatic microorganisms has also been accomplished. SIMPLIFIED DIAGNOSIS OF FREEMARTINISM IN CATTLE In cattle, nearly all female calves having a male twin, referred to as freemartins, are infertile. Traditionally diagnosed by culturing white blood cells and examining them for sex chromosome chimerism, a polymerase chain reaction (PCR)-based method has been developed to allow rapid, simple, and sensitive detection of the XX and XY white cells in peripheral blood (Schellander K, J Peli, TA Taha, E Kopp and B Mayr. 1992. Diagnosis of bovine freemartinism by the polymerase chain reaction method. Animal Genetics 23: 549-551). The ZFY/ZFX fragment, from male and female DNA on the X and Y chromosomes, is amplified and the PCR product is digested with a restriction enzyme. Difference in the fragments generated by this digestion allow distinction between the sexes. Cells containing the Y chromosome can be detected in a population consisting largely of female cells. DETECTION OF MYCOPLASMA IOWAE INFECTIONS Mycoplasma iowae is a significant cause of embryo mortality in turkeys; it is transmitted transovarially by carriers which are often asymptomatic. Loss of as little as three-to-five percent of a hatch can be economically crippling to a producer. Joint studies conducted by researchers in the US (Drs. Mark Jackwood and Stan Kleven of the University of Georgia) and Israel (Dr. S. Levisohn of the Kimron Veterinary Institute, Bet Dagan) may produce diagnostic methods which will allow control of the disease by elimination of carrier birds. The cooperative approach will include development of methods for detection of antimycoplasmal antibodies in infected birds, using specific antigens purified from M. iowae; the workers are at present evaluating various easily-obtained samples (including egg yolk) for usefulness as diagnostic specimens. A second approach to detection of M. iowae is the use of a PCR-based method. A two- tiered system may be the most useful, in which breeder flocks are cleared of disease through diagnosis by the PCR-based method and are then monitored regularly by the less-expensive serologic method (BARD Newsletter 12: 2-3, 1992). AGRICULTURAL BIOTECHNOLOGY NOTES Mark D. Dibner, Ph.D., Director, Institute for Biotechnology Information, North Carolina Biotechnology Center In a review of the literature related to commercial biotechnology in agriculture and the environment, two interesting articles deserve mention. (numbers in parentheses refer to the article number in the literature database {Door 6} on the NBIAP bulletin board). The first article describes how the United States is helping to fund the Vavilov Plant Industry Institute, a seed bank said to represent more than 10 percent of the earth's cultivated plant life. Due to budget crises in the Soviet Union, this Institute was in dire financial straits, but USDA has implemented a rescue plan of some $1.5 million, much of which will come from the U.S. Agency for International Development. The plan calls for support of modernizing the Institute's ability to track data (with 10 new personal computers and a USDA computer specialist). With this support, the valuable resources of the Vavilov Institute are now likely to be preserved. (8271). Another article points to the importance of agricultural biotechnology to put food on tables in developing countries. Populations in these countries make up 70% of the Earth's population, but this will grow to 90% within a generation. According to the World Bank, food production in these countries will need to double in the next 25 years. The funding for research, development and its implementation in agricultural biotechnology will need to come from government and private foundations, such as the U.S. Agency for International Development. In the last 10 years, the World Bank and other groups have spent $180 million towards this end, and, since 1985, the Rockefeller Foundation has added another $50 million. This has allowed countries such as Thailand and the People's Republic of China to make advances in developing new strains of rice. The next step is transferral of the technology from R&D to the market and thus to the people. (8252) FORUM On the eve of 'Jurassic Park' many in the industry are waiting for the other shoe to drop. Jurassic Park is not the first major motion picture to involve biotechnology or have biotechnology gone astray. It will easily be the most publicized film of this type, though. Based upon a novel of the same title by Michael Crichton, the premise of the book and movie is that dinosaur DNA extracted from mesozoic era insects which had bitten the animals and then were entombed in amber, can be used to recreate living dinosaurs for a modern day theme park. A recent assessment by the communications group of the IBA concluded that the movie will be viewed not as a genetic engineering picture, but as a picture about dinosaurs. Indeed, Michael Crichton, Jurassic Park's Author, has been quoted as saying, "People will not come away from the movie of 'Jurassic Park' with a fear of biotechnology. They will have a fear of dinosaurs." Jurassic Park will likely be viewed as entertainment. Still, we have to wait and see. Much has already been written about the movie and its potential effects on the biotechnology industry as evidenced by articles in the Wall St. Journal (2/10/93), The NY Times (5/11/93) and many industry dailies, weeklies and monthlies. The headline of the NY Times article, "Scientists Fret About 'Jurassic Park' Message," is particularly revealing. Our message should be a recognition that the American public is undereducated about biotechnology. And ignorance about a subject can lead to unsubstantiated fears. Recently, in a class of 33 MBA students at Duke University, less than one-third of the students felt they knew the meaning of recombinant DNA or genetic engineering; half of these 10 worked in the biotechnology, pharmaceutical or related fields. If these results are any indication, only 20% of MBA students had picked up an understanding of the meaning of biotechnology. Public education about new technology is essential if we are going to combat irrational fears that could be spawned by a movie about dinosaurs. Only recently has the biotechnology industry alerted itself to the fact that it must improve public understanding and perception of biotechnology. The recently merged Biotechnology Industry Organization (BIO) has vowed increased spending on these activities and a focus on its education committee activities. NEWS REPORTS,DOWNLOADABLE DATABASES, AND PERMIT APPLICATION SYSTEM NOW AVAILABLE THROUGH INTERNET If you would like to access the news reports, databases, and the permit application system via internet, follow the subsequent procedure. 1. After you have logged on to your network, type ftp ftp.vt.edu and press ENTER. 2. When it asks for your name, use anonymous as your user-id, press ENTER and type in your e-mail address as your password. 3. Type cd pub/biotechnology, press ENTER 4. Type "ls" to get a listing of all the files and the directories (directories begin with capital letters). We suggest you download and read the file README before proceeding further. PRINTED COPIES OF THE NEWS REPORT If you prefer the News Report in printed form, call Information Systems for Biotechnology at (703) 231-3747. Or, you may go to the Main Menu, leave a (C)omment for the SysOp giving us your address, and we will include you on the mailing list. **************************************************************** The material in this News Report is compiled by Information Systems for Biotechnology at the Virginia Polytechnic Institute and State University. It does not necessarily reflect the views of the U.S. Department of Agriculture. ****************************END*********************************